PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000204t1
Common NameTCM_000204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 315aa    MW: 35022.8 Da    PI: 5.7231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000204t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-094089154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  Thecc1EG000204t1 40 RKVQKADREKLRRDRLNEQFLELGNTLDPD----RPKNDKATILMDTIQMLKDL 89
                      5677889********************997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.8873989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-74089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-64094No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1140112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1240108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-54595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDHQWKSNDF SKSVAADLGP SNPEPRQRQE VEVKDPIAAR KVQKADREKL RRDRLNEQFL  60
ELGNTLDPDR PKNDKATILM DTIQMLKDLT AEVSRLKDEC SSLTEESREL TQEKNELREE  120
KASLKADIDN LNVQYQQRLR VMFPWNGIDP SVVMPPPYSY PVHLPLPTGP IPIHPSLQPY  180
PLYGNHNPGA IANPCSTFMP YSATTNTPID QPSSQHASSS HTSIKRDSRS KSMDEQRGSN  240
GDRCDGSNDV ATELELKMPG SSTNQELSAG EKKGKQTQKE RSMVNGSSSS RYSLSQGLQD  300
SSSDSVDDVP NSNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046692.10.0Basic helix-loop-helix DNA-binding superfamily protein isoform 1
SwissprotQ9LT234e-76BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A061DFA40.0A0A061DFA4_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGVIT_04s0023g03430.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-74bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]